diff --git a/MODULE.bazel b/MODULE.bazel
index 8a77bf556d..73e3eb3eb7 100644
--- a/MODULE.bazel
+++ b/MODULE.bazel
@@ -17,7 +17,7 @@ module(
 bazel_dep(name = "abseil-cpp", version = "20240722.0", repo_name = "com_google_absl")
 bazel_dep(name = "bazel_skylib", version = "1.7.1")
 bazel_dep(name = "contrib_rules_jvm", version = "0.27.0")
-bazel_dep(name = "eigen", version = "3.4.0.bcr.1")
+bazel_dep(name = "eigen", version = "3.4.0.bcr.2")
 bazel_dep(name = "fuzztest", version = "20241028.0", repo_name = "com_google_fuzztest")
 bazel_dep(name = "gazelle", version = "0.39.1", repo_name = "bazel_gazelle")
 bazel_dep(name = "glpk", version = "5.0.bcr.2")
@@ -25,21 +25,21 @@ bazel_dep(name = "google_benchmark", version = "1.8.5", repo_name = "com_google_
 bazel_dep(name = "googletest", version = "1.15.2", repo_name = "com_google_googletest")
 bazel_dep(name = "highs", version = "1.8.1.bcr.1")
 bazel_dep(name = "platforms", version = "0.0.10")
-bazel_dep(name = "protobuf", version = "29.1", repo_name = "com_google_protobuf")
+bazel_dep(name = "protobuf", version = "29.2", repo_name = "com_google_protobuf")
 bazel_dep(name = "pybind11_abseil", version = "202402.0", repo_name = "org_pybind11_abseil")
 bazel_dep(name = "pybind11_bazel", version = "2.13.6")
 bazel_dep(name = "pybind11_protobuf", version = "0.0.0-20240524-1d7a729")
 bazel_dep(name = "re2", version = "2024-07-02", repo_name = "com_google_re2")
-bazel_dep(name = "rules_cc", version = "0.0.16")
+bazel_dep(name = "rules_cc", version = "0.0.17")
 bazel_dep(name = "rules_go", version = "0.50.1", repo_name = "io_bazel_rules_go")
 bazel_dep(name = "rules_java", version = "8.6.1")
 bazel_dep(name = "rules_jvm_external", version = "6.4")
 bazel_dep(name = "rules_license", version = "1.0.0")
-bazel_dep(name = "rules_proto", version = "7.0.2")
+bazel_dep(name = "rules_proto", version = "7.1.0")
 bazel_dep(name = "rules_python", version = "0.40.0")
 bazel_dep(name = "scip", version = "9.2.0.bcr.2")
 bazel_dep(name = "swig", version = "4.3.0")
-bazel_dep(name = "zlib", version = "1.3.1.bcr.3")
+bazel_dep(name = "zlib", version = "1.3.1.bcr.4")
 
 git_override(
     module_name = "pybind11_abseil",
diff --git a/bazel/notebook_requirements.in b/bazel/notebook_requirements.in
index 6ff81cbaeb..cbf8f33dda 100644
--- a/bazel/notebook_requirements.in
+++ b/bazel/notebook_requirements.in
@@ -2,7 +2,7 @@
 absl-py==2.1.0
 immutabledict==3.0.0
 numpy==2.2.0
-protobuf==5.29.1
+protobuf==5.29.2
 requests==2.32.0
 scipy==1.14.1
 
diff --git a/bazel/notebook_requirements.txt b/bazel/notebook_requirements.txt
index c750ef9265..57b34c6de5 100644
--- a/bazel/notebook_requirements.txt
+++ b/bazel/notebook_requirements.txt
@@ -216,7 +216,7 @@ prometheus-client==0.17.1
     # via jupyter-server
 prompt-toolkit==3.0.39
     # via ipython
-protobuf==5.29.1
+protobuf==5.29.2
     # via
     #   -r bazel/notebook_requirements.in
     #   mypy-protobuf
diff --git a/bazel/ortools_requirements.in b/bazel/ortools_requirements.in
index ee00bfb8a0..276c29d3e7 100644
--- a/bazel/ortools_requirements.in
+++ b/bazel/ortools_requirements.in
@@ -2,7 +2,7 @@
 absl-py==2.1.0
 immutabledict==3.0.0
 numpy==2.2.0
-protobuf==5.29.1
+protobuf==5.29.2
 requests==2.32.3
 scipy==1.14.1
 
diff --git a/bazel/ortools_requirements.txt b/bazel/ortools_requirements.txt
index d8cdc98c94..2d8e324490 100644
--- a/bazel/ortools_requirements.txt
+++ b/bazel/ortools_requirements.txt
@@ -45,7 +45,7 @@ platformdirs==3.10.0
     # via
     #   black
     #   virtualenv
-protobuf==5.29.1
+protobuf==5.29.2
     # via
     #   -r bazel/ortools_requirements.in
     #   mypy-protobuf